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Figure 2. CDK8 was a barrier of MEF-XEN reprogramming (A) CDK8 activity inhibition assays in vitro for SEL120-34A HCl (control), MSC2530818, E-616452, and A-83-01. (B) qPCR of Sox17, Gata4, Sall4, and Foxa2 in samples with MEF medium, base, CFAE+8+DMSO/BI/MSC, and CFAE+6 treatment and base control for 12 days, respectively (C, CHIR99021; F, forskolin; A, AM580; E, EPZ04777; 6, E-616452; 8, A-83-01; S, <t>SB431542;</t> L, LY364947). Base, XEN basal medium. Data are presented as mean ± SEM. *p < 0.05, **p < 0.01, ****p < 0.0001 between CFAE+8+DMSO and indicated samples. Numbers in brackets are the concentrations (mM) of each small molecule.
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Figure 2. CDK8 was a barrier of MEF-XEN reprogramming (A) CDK8 activity inhibition assays in vitro for SEL120-34A HCl (control), MSC2530818, E-616452, and A-83-01. (B) qPCR of Sox17, Gata4, Sall4, and Foxa2 in samples with MEF medium, base, CFAE+8+DMSO/BI/MSC, and CFAE+6 treatment and base control for 12 days, respectively (C, CHIR99021; F, forskolin; A, AM580; E, EPZ04777; 6, E-616452; 8, A-83-01; S, <t>SB431542;</t> L, LY364947). Base, XEN basal medium. Data are presented as mean ± SEM. *p < 0.05, **p < 0.01, ****p < 0.0001 between CFAE+8+DMSO and indicated samples. Numbers in brackets are the concentrations (mM) of each small molecule.
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Addgene inc plasmidplko 1 trc cloning vector
Figure 2. CDK8 was a barrier of MEF-XEN reprogramming (A) CDK8 activity inhibition assays in vitro for SEL120-34A HCl (control), MSC2530818, E-616452, and A-83-01. (B) qPCR of Sox17, Gata4, Sall4, and Foxa2 in samples with MEF medium, base, CFAE+8+DMSO/BI/MSC, and CFAE+6 treatment and base control for 12 days, respectively (C, CHIR99021; F, forskolin; A, AM580; E, EPZ04777; 6, E-616452; 8, A-83-01; S, <t>SB431542;</t> L, LY364947). Base, XEN basal medium. Data are presented as mean ± SEM. *p < 0.05, **p < 0.01, ****p < 0.0001 between CFAE+8+DMSO and indicated samples. Numbers in brackets are the concentrations (mM) of each small molecule.
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Figure 2. CDK8 was a barrier of MEF-XEN reprogramming (A) CDK8 activity inhibition assays in vitro for SEL120-34A HCl (control), MSC2530818, E-616452, and A-83-01. (B) qPCR of Sox17, Gata4, Sall4, and Foxa2 in samples with MEF medium, base, CFAE+8+DMSO/BI/MSC, and CFAE+6 treatment and base control for 12 days, respectively (C, CHIR99021; F, forskolin; A, AM580; E, EPZ04777; 6, E-616452; 8, A-83-01; S, SB431542; L, LY364947). Base, XEN basal medium. Data are presented as mean ± SEM. *p < 0.05, **p < 0.01, ****p < 0.0001 between CFAE+8+DMSO and indicated samples. Numbers in brackets are the concentrations (mM) of each small molecule.

Journal: Cell reports

Article Title: Transcriptome-based chemical screens identify CDK8 as a common barrier in multiple cell reprogramming systems.

doi: 10.1016/j.celrep.2023.112566

Figure Lengend Snippet: Figure 2. CDK8 was a barrier of MEF-XEN reprogramming (A) CDK8 activity inhibition assays in vitro for SEL120-34A HCl (control), MSC2530818, E-616452, and A-83-01. (B) qPCR of Sox17, Gata4, Sall4, and Foxa2 in samples with MEF medium, base, CFAE+8+DMSO/BI/MSC, and CFAE+6 treatment and base control for 12 days, respectively (C, CHIR99021; F, forskolin; A, AM580; E, EPZ04777; 6, E-616452; 8, A-83-01; S, SB431542; L, LY364947). Base, XEN basal medium. Data are presented as mean ± SEM. *p < 0.05, **p < 0.01, ****p < 0.0001 between CFAE+8+DMSO and indicated samples. Numbers in brackets are the concentrations (mM) of each small molecule.

Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Dexamethasone Selleck Cat# S5956; CAS: 2392-39-4 A-83-01 Selleck Cat# S7692; CAS: 909910-43-6 SB431542 Selleck Cat# S1067; CAS: 301836-41-9 LY364947 Selleck Cat# S2805; CAS: 396129-53-6 Y-27632 Selleck Cat# S6390; CAS: 146986-50-7 Hydrocortisone (cortisol) TargetMol Cat# T1614; CAS 50-23-7 Triiodothyronine TargetMol Cat# T29011; CAS 31135-55-4 Rosiglitazone TargetMol Cat# T0334; CAS 122320-73-4 BI-1347 TargetMol Cat# T5405; CAS 2163056-91-3 MSC2530818 TargetMol Cat# TQ0266; CAS 1883423-59-3 Kinase inhibitor library MedChemExpress Cat# HY-L00 Critical commercial assays EndoFree Maxi Plasmid Kit TIANGEN Cat# DP117 TIANprep Rapid Mini Plasmid Kit TIANGEN Cat# DP105 Universal DNA Purification Kit TIANGEN Cat# DP214-03 TransScript One-Step gDNA Removal and cDNA Synthesis SuperMix TransGen Cat# AT311-02 EasyPure RNA Kit TransGen Cat# ER101-01 TransStart FastPfu Fly DNA Polymerase TransGen Cat# AP231-02 pEASY-Uni Seamless Cloning and Assembly Kit TransGen Cat# CU101-02 KAPA HiFi PCR Kits KAPA BIOSYSTEMS Cat# KK2602 TruePrep DNA Library Prep Kit V2 for Illumina Vazyme Cat# TD502-01 Deposited data ATAC-Seq This paper GEO: GSE227566 Drug-seq2 This paper GEO: GSE227568 RNA-seq This paper GEO: GSE227569 Mouse reference genome mm10 UCSC https://hgdownload.soe.ucsc.edu/ goldenPath/mm10/bigZips/ Experimental models: Cell lines Mouse: mESC TT2 RIKEN BioResource Center Stock No.: AES0014 Experimental models: Organisms/strains Mouse: B6;CBA-Tg(Pou5f1-EGFP)2Mnn/J The Jackson Labratory RRID:IMSR_JAX:004654 Oligonucleotides Primers for quantitative real-time PCR, see Table S1 This paper N/A Recombinant DNA FU-tet-o-hOct4 (Maherali et al., 2008)37 Addgene PlasmidFU-tet-o- hOct4 Cat# 19778 FU-tet-o-GFP This paper N/A FU-tet-o-mCdk8-2HA This paper N/A FU-tet-o-mHnf4a This paper N/A FU-tet-o-mFoxa3 This paper N/A FU-tet-o-hCDK8 This paper N/A FU-tet-o-hCDK8-DFG This paper N/A FU-tet-o-hCDK8-15AA This paper N/A FU-tet-o-hCDK8-NMG This paper N/A pLKO.1-TRC cloning vector (Moffat et al., 2006)38 Addgene PlasmidpLKO.1-TRC cloning vector Cat# 10878 pLKO.1-scramble This paper N/A (Continued on next page) Cell Reports 42, 112566, June 27, 2023 17

Techniques: Activity Assay, Inhibition, In Vitro, Control